Abstract: Bidirectional Long Short-Term Memory (LSTM) is a special kind of Recurrent Neural Network (RNN) architecture which is designed to model sequences and their long-range dependencies more ...

This valuable study uses a novel experimental design to elegantly demonstrate how we exploit stimulus structure to overcome working memory capacity limits. The presented behavioural and neural ...

Computational models starting from large ensembles of evolutionarily related protein sequences capture a representation of protein families and learn constraints associated to protein structure and ...

I need to call SNPs in a multiple sequence alignment from several sanger sequencing sequences, but did not find a simple software that can do that, so I just wrote one. After you get the SNPs and ...

Department of ECE, National Institute of Technology, Durgapur 713209, India Department of CSE, Narula Institute of Technology, Kolkata 700109, India Article Views are the COUNTER-compliant sum of full ...

The functional study on circRNAs has been increasing in the past decade due to its important roles in micro RNA sponge, protein coding, the initiation, and progression of diseases. The study of ...

To evaluate the result generated by the ZSDP approach against standard sequence alignments, we compared the genome annotation files with RNA-seq results using Cufflinks v2.2.1 (Trapnell et al., 2012).

SWAMP analyses multiple sequence alignments in a phylogenetic context, looking for regions of higher than expected non-synonymous substitutions along a branch, over a short sequence window. If a user ...

Tree and sequence alignment visualizations have a long history. Evolutionary tree diagrams can be found in even the earliest descriptions of evolution, and their visualization still plays a key role ...

We present sequence alignment software, called PTMap, for the accurate identification of full-spectrum protein post-translational modifications (PTMs) and polymorphisms. The software incorporates ...

Dynamic programming algorithms guarantee to find the optimal alignment between two sequences. For more than a few sequences, exact algorithms become computationally impractical, and progressive ...